configure: error: "libxml not found"

-- Detecting C compile features checking for suffix of object files o What differentiates living as mere roommates from living in a marriage-like relationship? In the Ubuntu packaging system, the libXXX packages often only contain the runtime libraries necessary for running applications that dynamically link the library. I made sure xml2 and libxml2 are installed (via sudo apt-get install) but that's not enough. How do you know the names. To subscribe to this RSS feed, copy and paste this URL into your RSS reader. So, a little more info here, since I'm still not sure if this is an arch/libxml2 problem, or a libiio one. What does "up to" mean in "is first up to launch"? Well occasionally send you account related emails. If pkg-config of the following names: Add the installation prefix of "Python" to CMAKE_PREFIX_PATH or set checking for gzopen in -lz no provides a separate development package or SDK, be sure it has been Please check your libxml2 installation. checking for suffix of executables Connect and share knowledge within a single location that is structured and easy to search. Here is the diff in case someone else has the same problem, what didn't work, but I also tried: building and installing AUR version libxml2-git as well as installing libxml2-2.9.9-2. Minor 9, Patch 4 for 2.9.4 conda install -c r r-xml. To determine what path to check, I installed locate (sudo apt install mlocate) and using locate libxml | grep '\.pc', I found that this file exists: /usr/lib/x86_64-linux-gnu/pkgconfig/libxml-2.0.pc. The output is this: > source("https://bioconductor.org/biocLite.R") To subscribe to this RSS feed, copy and paste this URL into your RSS reader. To learn more, see our tips on writing great answers. -- Looking for newlocale - found i.e. ), I had this issue with PHP 7.4 build from source on Ubuntu 16.04 which I fixed by using the same way for OSX suggested above + installing dev package for libxml2-dev. to your account, phpenv so I'm trying to use pkg-config, as it suggests but then getting the new error: /app/INSTALL_FILES/pkg-config-.29.2 # ./configure --with-internal-glib but I get this error when I try 'make' command: # CC=gcc # export CC # make make By clicking Accept all cookies, you agree Stack Exchange can store cookies on your device and disclose information in accordance with our Cookie Policy. How can I control PNP and NPN transistors together from one pin? it should tell you what environment variables you need to set in order to find libxml2 So, armed with these last two pieces of info, you should be able . #include Why don'y you use the conda package for CRAN's XML (called r-xml)? checking whether the C compiler works yes i have tried to install libxml2 with $ brew install libxml but its says Warning: libxml2-2.9.3 already installed. I'm a bit at a loss here, xsltproc is /usr/bin/xsltproc. // . Can you still use Commanders Strike if the only attack available to forego is an attack against an ally? If total energies differ across different software, how do I decide which software to use? It is the XML support library, and required for HTML and XML support in Emacs. sequential (one-line) endnotes in plain tex/optex. During the ./configure it will produce the following error: However I do have libxslt installed, e.g. Browse other questions tagged. long story short: if "/bin" is in your PATH, cmake doesn't work correctly. no configure: error: "libxml not found" ERROR: configuration failed for package 'XML' Can I connect multiple USB 2.0 females to a MEAN WELL 5V 10A power supply? sponsoring much of the work on this release! Excellent :-) Good luck with your project! xml.c always uses /usr/include even though I set my own sysroot path. Share Improve this answer Follow answered Mar 14, 2019 at 16:39 stdunbar 15.8k 10 35 50 git clone https://github.com/analogdevicesinc/libiio.git Literature about the category of finitary monads. [1] compiler_3.4.1 tools_3.4.1. make[1]: *** [CMakeFiles/iio.dir/all] Error 2 Policy. Error installing the stringi package on R 4 on Linux Ubuntu, Having Trouble Downloading Tidyverse in R. What was the actual cockpit layout and crew of the Mi-24A? I'm using autoconf 2.69. checking for gcc gcc What are the advantages of running a power tool on 240 V vs 120 V? Learn more about Stack Overflow the company, and our products. from /usr/include/libxml2/libxml/threads.h:35, [ 42%] Building C object CMakeFiles/iio.dir/xml.c.o Platform: x86_64-pc-linux-gnu (64-bit) -- Found FLEX: /usr/bin/flex (found version "2.6.4") For Microsoft Windows 64-bit Emacs, the file nt/INSTALL.w64 says this: Run msys2_shell.bat in your MSYS2 directory and you will see a BASH window opened. [root@catest php-5.5.7]# yum install libxml2-devel Even the AUR version doesn't do anything weird in the PKGBUILD. checking whether we are using the GNU C compiler yes checking whether we are cross compiling no I have added all dependancy described there listed bellow: After adding dependancies i am trying to run bellow commands. checking for pkg-config /usr/bin/pkg-config I am trying to add libvisio in my mac os x from https://wiki.documentfoundation.org/DLP/Libraries/libvisio. Are there any canonical examples of the Prime Directive being broken that aren't shown on screen? 565), Improving the copy in the close modal and post notices - 2023 edition, New blog post from our CEO Prashanth: Community is the future of AI. Content Discovery initiative April 13 update: Related questions using a Review our technical responses for the 2023 Developer Survey, Error installing R 2.13.0 packages (caret) on Ubuntu 10.04, Unable to compile xps after installing ROOT, missing libraries, RCDK package installation fails in R studio. The header files and library seem to be -- Check for working C compiler: /usr/bin/cc -- works Your post saved me, thank you! 2. [ 30%] Building C object CMakeFiles/iio.dir/xml.c.o Generally to troubleshoot a configure problem, you should download the package tarball, run the installation, and inspect the config.log file. Can you still use Commanders Strike if the only attack available to forego is an attack against an ally? I've updated the README to explicitly mention this dependency. By clicking Post Your Answer, you agree to our terms of service, privacy policy and cookie policy. Could a subterranean river or aquifer generate enough continuous momentum to power a waterwheel for the purpose of producing electricity? As you can see, libxml2 is being found in /usr/lib and not in the sysroot defined. -- Doxygen not found, API documentation won't be generated I have checked the pathname for sysroot and it is most certainly correct. Whether you are a digital nomad or just looking for flexibility, Shells can put your Linux machine on the device that you want to use. Looks like the new markdown functionality is affecting the last section`# Install XML` with an `a href` tags, but looks normal when I try to edit the post. while building fro source, libiio seems to be unable to find libxml2, at least unter arch linux. Checking for 1.8: /home/***/anaconda3/include/libxml2/ https://github.com/analogdevicesinc/libiio/blob/master/README.md. checking for suffix of object files o Can't find ImageMagick with pkg-config on Ubuntu 16.04. It is possible though that large How about saving the world? In file included from /usr/include/libxml2/libxml/parser.h:810:0, Ongoing work on libxml2 relies on funding. Sign up for a free GitHub account to open an issue and contact its maintainers and the community. downloaded 1.5 MB, * installing *source* package XML checking for xml2-config /home/kkarius/anaconda3/bin/xml2-config Alternatively, you may set the environment variables LIBXML_CFLAGS and LIBXML_LIBS to avoid the need to call pkg-config. A freelance writer on latest trends in technology, gadget reviews, How to's and many more. R version 3.4.1 (2017-06-30) What is this brick with a round back and a stud on the side used for? Also you should know that pgModeler 0.9.2 is packaged in Ubuntu 20.04 LTS at https://packages.ubuntu.com/focal/pgmodeler, so it installable as simple as. from /usr/include/libxml2/libxml/tree.h:1307, -- Performing Test WITH_NETWORK_EVENTFD Why does contour plot not show point(s) where function has a discontinuity? -- Looking for libusb_get_version How about saving the world? checking whether we are using the GNU C compiler yes -- Detecting C compiler ABI info 565), Improving the copy in the close modal and post notices - 2023 edition, New blog post from our CEO Prashanth: Community is the future of AI. I wasn't see anyway to override this false positive libxml1 check, so a hack of a workaround you can use is to patch out that branch of the configure script. How can I fix this? How to combine several legends in one frame? Internal checking for suffix of executables thanks, which can be solved by installing, thanks, actually my issue was PKG_CONFIG_PATH wasn't setup correctly. Will check out your README and see if this fits in my project scope, which I think it should. Site design / logo 2023 Stack Exchange Inc; user contributions licensed under CC BY-SA. @ N0rbert - that's really useful information and is helping me progress, thanks. What does the power set mean in the construction of Von Neumann universe? Bioconductor version 3.5 (BiocInstaller 1.26.1), ?biocLite for help Does a password policy with a restriction of repeated characters increase security? Make sure your system has the libxml-dev or libxml2-dev package installed. Checking directory of LIBXML_INCDIR Located parser file /opt/lampp/include/parser.h Checking for 1.8: /opt/lampp/include Using libxml2. -- Performing Test HAS_O_TMPFILE - Success You signed in with another tab or window. I'll play around with my PATH and see if I can get it going. [ 7%] Building C object CMakeFiles/iio.dir/channel.c.o Warning message: checking how to run the C preprocessor gcc -E [ 11%] Building C object CMakeFiles/iio.dir/device.c.o How do I stop the Flickering on Mode 13h? R -q --vanilla < -- Looking for stdint.h cmake --sysroot=${PWD}/../../ubuntu-18.04.2-minimal-armhf-2019-02-16 ../ By clicking Accept all cookies, you agree Stack Exchange can store cookies on your device and disclose information in accordance with our Cookie Policy. Using Bioconductor 3.5 (BiocInstaller 1.26.1), R 3.4.1 (2017-06-30). I got the idea from the LibXML2 documentation. Thanks! "Python_DIR" to a directory containing one of the above files. [ 16%] Building C object CMakeFiles/iio.dir/utilities.c.o Checking directory of LIBXML_INCDIR Would you ever say "eat pig" instead of "eat pork"? What to do? Ask Ubuntu is a question and answer site for Ubuntu users and developers. Why in the Sierpiski Triangle is this set being used as the example for the OSC and not a more "natural"? compilation terminated. Can I connect multiple USB 2.0 females to a MEAN WELL 5V 10A power supply? Asking for help, clarification, or responding to other answers. To subscribe to this RSS feed, copy and paste this URL into your RSS reader. Making statements based on opinion; back them up with references or personal experience. is a Web Designer and content creator. which indicates to me that /usr/lib/x86_64-linux-gnu/pkgconfig is already in the default path for pkg-config. Checking Irreducibility to a Polynomial with Non-constant Degree over Integer. Asking for help, clarification, or responding to other answers. 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